Package: blmeco 1.4

blmeco: Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"

Data files and functions accompanying the book Korner-Nievergelt, Roth, von Felten, Guelat, Almasi, Korner-Nievergelt (2015) "Bayesian Data Analysis in Ecology using R, BUGS and Stan", Elsevier, New York.

Authors:Fraenzi Korner-Nievergelt, Tobias Roth, Stefanie von Felten, Jerome Guelat, Bettina Almasi, Pius Korner-Nievergelt

blmeco_1.4.tar.gz
blmeco_1.4.zip(r-4.5)blmeco_1.4.zip(r-4.4)blmeco_1.4.zip(r-4.3)
blmeco_1.4.tgz(r-4.4-any)blmeco_1.4.tgz(r-4.3-any)
blmeco_1.4.tar.gz(r-4.5-noble)blmeco_1.4.tar.gz(r-4.4-noble)
blmeco_1.4.tgz(r-4.4-emscripten)blmeco_1.4.tgz(r-4.3-emscripten)
blmeco.pdf |blmeco.html✨
blmeco/json (API)

# Install 'blmeco' in R:
install.packages('blmeco', repos = c('https://fraenzi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/fraenzi/blmeco/issues

Datasets:
  • anoctua - Presence-absence data of Little owls in nest boxes
  • blackstork - Breeding success of Black storks in Latvia
  • cortbowl - Stress hormone data of nestling barn owls which were either treated with a corticosterone-implant or with a placebo-implant as control
  • ellenberg - Hohenheim groundwater table experiment of Heinz Ellenberg
  • frogs - Counts of the number of frogs in a water body
  • mdat - Simulated set of correlated variables
  • nightingales - Nightingale territory occupancy data
  • parusmajor - Number of migrating Great tits
  • periparusater - The data contain morphological measurements taken from museum skins of Coal tits
  • pondfrog - Fake Data of the Numbers of Frogs in Ponds
  • pondfrog1 - Fake Data: Number of Frogs in Ponds
  • redstart - Common Redstart (Phoenicurus phoenicurus) counts
  • resprouts - Survival data of tree sprouts
  • roostingsiteuse - Roosting site use by little owls
  • spermdepletion - Sperm depletion data in a hermaphrodite sea slug
  • survival_swallows - Telemetry data of Barn swallow fledglings
  • swallowfarms - Number of fledged Barn Swallows per nest
  • swallows - Data set with number of nesting swallows per barn
  • wildflowerfields - Territory numbers of Whitethroat in wildflowerfields
  • wingbowl - Growth rate data of Barn owl nestlings and corticosterone
  • yellow_bellied_toad - Site-occupancy data for Yellow-bellied toads

On CRAN:

9 exports 3.30 score 13 dependencies 20 mentions 111 scripts 458 downloads

Last updated 5 years agofrom:d7ff020690. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 11 2024
R-4.5-winOKSep 11 2024
R-4.5-linuxOKSep 11 2024
R-4.4-winOKSep 11 2024
R-4.4-macOKSep 11 2024
R-4.3-winOKSep 11 2024
R-4.3-macOKSep 11 2024

Exports:AICweightscompareqqnormcrosspointdispersion_glmerhistoryplotloo.cvocvtriplot.normal.knownvarianceWAIC

Dependencies:abindarmbootcodalatticelme4MASSMatrixminqanlmenloptrRcppRcppEigen

Readme and manuals

Help Manual

Help pageTopics
Data Sets and Functions Accompagning the Book Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS and Stanblmeco-package blmeco
Calculates AIC-weights from a vector of AIC valuesAICweights
Presence-absence data of Little owls in nest boxesanoctua
Breeding success of Black storks in Latviablackstork
Produces QQ-plots of model residuals and of random normal samplescompareqqnorm
stress hormone data of nestling barn owls which were either treated with a corticosterone-implant or with a placebo-implant as controlcortbowl
Gives the x and y-coordinates of the cross point of two straight linescrosspoint
Measures dispersion in a glmer-modeldispersion_glmer
Hohenheim groundwater table experiment of Heinz Ellenbergellenberg
Counts of the number of frogs in a water bodyfrogs
Function to plot history (trace) plots of the Markov chains obtained by STAN or by WinBUGS.historyplot
Bayesian leave-one-out cross-validationloo.cv
Simulated set of correlated variablesmdat
Nightingale territory occupancy datanightingales
Ordinary cross validation scoreocv
Number of migrating Great titsparusmajor
The data contain morphological measurements taken from museum skins of Coal tits (Periparus ater)periparusater
Fake Data of the Numbers of Frogs in Pondspondfrog
Fake Data: Number of Frogs in Pondspondfrog1
Common Redstart (Phoenicurus phoenicurus) countsredstart
Survival data of tree sproutsresprouts
Roosting site use by little owlsroostingsiteuse
Sperm depletion data in a hermaphrodite sea slugspermdepletion
Telemetry data of Barn swallow fledglingssurvival_swallows
Number of fledged Barn Swallows per nestswallowfarms
Data set with number of nesting swallows per barnswallows
Draw prior, data and posterior for a known variance normal distribution exampletriplot.normal.knownvariance
Watanabe-Akaike or widely applicable information criterion (WAIC)WAIC
Territory numbers of Whitethroat in wildflowerfieldswildflowerfields
Growth rate data of Barn owl nestlings and corticosteronewingbowl
Site-occupancy data for Yellow-bellied toadsyellow_bellied_toad